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| ChromoMapper is a tool designed to evaluate genome assemblies, starting from the results of a mapping procedure carried out on a reference genome. It quickly identifies and displays similarities and differences between the compared genomes or assemblies using both tables and graphic representations.
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| About the tool
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| ChromoMapper is optimized for working on alignment results produced by QUAST or other alignment tools to calculate information about alignment blocks together with additional annotations.
It represents the main alignment regions at chromosomal or sub-chromosomal scale, highlights similarities and colinearity between the compared sequences, discontinuities and inconsistencies, repeated regions and interruptions in the assembled sequences. It works by integrating mapping data with external info and uses both in a broad range of interactively editable graphical views.
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| Download ChromoMapper
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| ChromoMapper is available as a command line tool and can be downloaded through Zenodo. It is written in PHP language and does not have any other dependecies.
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Contact
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| Giovanni Paolella (giovanni.paolella@unina.it)
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ChromoMapper
CEINGE-Biotecnologie Avanzate Franco Salvatore
Università degli Studi di Napoli Federico II
